Publications of Francisco M Couto

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Tiago Grego, Francisco Pinto, Francisco Couto, Identifying Chemical Entities based on ChEBI.Proceedings of ICBO 2012.

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Catia Pesquita, Francisco M. Couto 2012: Predicting the Extension of Biomedical Ontologies. PLOS Computational Biology 9(8), e1002630.

Poster | BibTeX source
João D. Ferreira, Francisco M. Couto, Semantic Similarity in the Biomedical Domain. Braga, Portugal. Poster @ Bioinformatics Open Days 2012. 2012

Presentation | BibTeX source
Francisco M. Couto, João D. Ferreira, João Zamite, Carlos Santos, Tiago Posse, Paulo Graça, Dulce Domingos, Mário J. Silva, The Epidemic Marketplace Platform: towards semantic characterization of epidemiological resources using biomedical ontologies.International Conference on Biomedical Ontologies (ICBO) 2012.

Document | Presentation | BibTeX source
João D. Ferreira, Catia Pesquita, Francisco M. Couto, Mário J. Silva, Bringing epidemiology into the Semantic Web.International Conference on Biomedical Ontologies (ICBO) 2012.

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Catia M. Machado, Francisco Couto, Alexandra R. Fernandes, Susana Santos, Ana T. Freitas, Toward a Translational Medicine Approach for Hypertrophic Cardiomyopathy.3rd International Conference on Information Technology in Bio- and Medical Informatics (ITBAM 2012) 2012. Springer-Verlag GmbH Berlin Heidelberg.

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Tiago Grego, Catia Pesquita, Hugo Bastos, Francisco M. Couto 2012: Chemical Entity Recognition and Resolution to ChEBI. ISRN Bioinformatics (2012), 9.

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João D. Ferreira, Francisco M. Couto, Mário J. Silva, Ontologies in the Epidemiological Domain. Poster presented at EE2, Epiwork/Epifor 2nd International Workshop: Facing the Challenge of Infectious Diseases. 2012

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João D. Ferreira, Catia Pesquita, Francisco Couto, Mário J. Silva, Epiwork Deliverable 3.5: Epidemic Data Ontology Technical Report. Technical Report . University of Lisbon, Faculty of Sciences, LASIGE, January 2012.

BibTeX source
Zamite, J., Silva, F., Couto, F., Silva, M. 2011: MEDCollector: Multisource epidemic data collector. Transactions on Large-scale Data-and Knowledge-centered Systems IV: Special Issue on Database Systems for Biomedical Applications (6990), 40--72.

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Isabel F. Cruz, Cosmin Stroe, Federico Caimi, Alessio Fabiani, Catia Pesquita, Francisco M. Couto, Matteo Palmonari, Using AgreementMaker to Align Ontologies for OAEI 2011.Ontology Matching Workshop at the 10th International Semantic Web Conference 2011.

DOI | | BibTeX source
Francisco Couto, Mário J. Silva 2011: Disjunctive Shared Information between Ontology Concepts: application to Gene Ontology. Journal of Biomedical Semantics.

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T. Simões, N. Charro, J. Blonder, Daniel Faria, Francisco Couto, K.C. Chan, T. Waybright, H.J. Isaaq, T.D. Veenstra, D. Penque 2011: Molecular profiling of the human nasal epithelium: A proteomics approach. Journal of Proteomics 75(1), 56-69.

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Isabel F. Cruz, Cosmin Stroe, Catia Pesquita, Francisco M. Couto, Valerie Cross, Biomedical Ontology Matching Using the AgreementMaker System.International Conference on Biomedical Ontologies 2011.

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Catia Pesquita, Francisco Couto, Where GO is going and what it means for ontology extension.International Conference on Biomedical Ontologies 2011.

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Bruno Tavares, Hugo Bastos, Daniel Faria, Joao D. Ferreira, Tiago Grego, Catia Pesquita, Francisco Couto, The Biomedical Ontology Applications (BOA) framework.Proceedings of ICBO 2011.

Document | BibTeX source
João D. Ferreira, Francisco Couto, Generic semantic relatedness measure for biomedical ontologies.Proceedings of ICBO 2011.

Document | BibTeX source
Hugo Bastos, Bruno Tavares, Catia Pesquita, Daniel Faria, Francisco Couto: Application of Gene Ontology to Gene Identification. In Silico Tools for Gene Discovery: Methods in Molecular Biology. Springer, 2011.

Document | BibTeX source
Hugo Bastos, Francisco Couto, Pedro M. Coutinho, Exploring Gene Ontology relationships in Enzyme Families: An application to Polysaccharide Lyases (as a poster).9th Carbohydrate Bioengineering Meeting p. 67, May, 2011.

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Silvio Moreira, David Batista, Paula Carvalho, Francisco Couto, Mário J. Silva, POWER - Politics Ontology for Web Entity Retrieval.ONTOSE 2011: 5th International Workshop on Ontology, Models, Conceptualization and Epistemology in Social, Artificial and Natural Systems 2011.

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Catia Pesquita, Cosmin Stroe, Isabel F. Cruz, Francisco Couto, BLOOMS on AgreementMaker: results for OAEI 2010.ISWC Workshop on Ontology Matching 2010.

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Francisco Couto, Ivan Andrade, Pedro Gonçalves, Paulo Verissimo, Benchmarking some Portuguese ST system research units Technical Report. Technical Report . DI FCUL Tecnical Report, 2010.

Document | BibTeX source
Catia M. Machado, Francisco Couto, Alexandra R. Fernandes, Susana Santos, Nuno Cardim, Ana T. Freitas, Semantic Characterization of Hypertrophic Cardiomyopathy Disease.First Workshop on Knowledge Engineering, Discovery and Dissemination in Health (KEDDH10), held in conjunction with The IEEE International Conference on Bioinformatics % Biomedicine (BIBM 2010) 2010.

Document | BibTeX source
Luis Filipe Lopes, Fabrício A. B. Silva, Francisco Couto, Mário Silva, Epiwork Epidemic Marketplace Metadata Application Profile Technical Report. Technical Report . Lasige - FCUL, September 2010.

Document | BibTeX source
Mário J. Silva, Francisco Couto, Dulce Domingos, Juliana Duque, Hugo Ferreira, Luís F. Lopes, Daniela Paolotti, Fabrício Silva, Patrícia Sousa, João Zamite, D 3.3 Public Release of the Epidemic Marketplace Platform Technical Report. Technical Report . LASIGE, University of Lisbon, Faculty of Sciences, September 2010.

BibTeX source
N. Charro, B.L. Hood, Daniel Faria, P. Pacheco, P. Azevedo, C. Lopes, A. Almeida, Francisco Couto, T.P. Conrads, D. Penque 2011: Serum proteomics signature of Cystic Fibrosis patients: A complementary 2-DE and LC--MS/MS approach. Journal of Proteomics 74(1), 110-126.

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João D. Ferreira, David Batista, Francisco Couto, Mário J. Silva, The Geo-Net-PT/Yahoo! GeoPlanet (TM) concordance Technical Report. TR 10-05. University of Lisbon, Faculty of Sciences, LASIGE, Setember 2010. doi: 10455/6677

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João D. Ferreira, Francisco Couto 2010: Semantic Similarity for Automatic Classification of Chemical Compounds. PLoS Computational Biology 9(6), e1000937.

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Catia M. Machado, Francisco Couto, Alexandra R. Fernandes, Susana Santos, Nuno Cardim, Ana T. Freitas 2010: Unraveling Hypertrophic Cardiomyopathy Variability. ERCIM News 82 - Special Theme: Computational Biology.

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Fabrício A.B. Silva, Mário J. Silva, Francisco Couto 2010: Epidemic Marketplace: an e-Science Platform for Epidemic Modelling and Analysis. ERCIM News 82(), 43-44. Special Theme: Computational Biology.


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